FastQCFastQC Report
Wed 8 May 2024
EGAF00007961499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497527
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41450.833120614559612No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23150.46530138062858895No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20500.41203793964950647No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18010.36199040454085907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15860.3187766694068865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9440.1897384463556752No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8240.16561915232741137No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6700.13466605832447284No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5480.11014477606240466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5060.10170302315251233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)