FastQCFastQC Report
Wed 8 May 2024
EGAF00007961501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545928
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44760.8198883369235503No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30950.5669245761345819No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG27930.5116059260561833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23540.4311923916706965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12490.2287847481719201No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10090.18482290705001392No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9190.1683372166292991No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6480.11869697102914671No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6310.11558300728301167No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6300.11539983294500374No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5940.1088055567767178No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5900.10807285942468604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)