FastQCFastQC Report
Wed 8 May 2024
EGAF00007961503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527664
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42870.81244883107432No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31260.5924224506504139No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG28320.5367051760211043No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25300.479471785075351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23480.44498013887625465No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11440.21680463325146307No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9940.18837745231814185No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9060.17170017283726008No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6380.12091027623639286No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5810.11010794748173079No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5590.10593862761151035No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5480.10385396767640014No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5370.10176930774128991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)