FastQCFastQC Report
Wed 8 May 2024
EGAF00007961505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549691
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46480.8455659634230869No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31670.5761418687953778No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG28720.5224753543354358No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24200.44024733895952456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11990.21812254521176444No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9670.17591701519581002No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8990.16354642881182338No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6640.12079513763186955No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.11133527745587975No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5960.1084245512478829No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5890.10715110853188427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5820.10587766581588566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)