FastQCFastQC Report
Wed 8 May 2024
EGAF00007961507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531524
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43470.8178370120634252No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29450.5540671728840091No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG27370.5149344150028973No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25310.47617793363987326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23080.4342231018731045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10900.20507070235774866No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10110.19020777989328796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8660.1629277323319361No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6670.12548821878221866No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5690.10705066939592567No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.1046048720283562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)