FastQCFastQC Report
Wed 8 May 2024
EGAF00007961508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505462
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11550.22850382422417512No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9550.1889360624537552No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8390.16598676062691162No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7960.15747969184627134No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7870.15569914256660244No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7130.14105907071154705No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5270.10426105226505653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)