FastQCFastQC Report
Wed 8 May 2024
EGAF00007961509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505462
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20250.4006235879255018No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12060.2385936034756322No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11720.2318670839746608No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8110.16044727397905284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8000.15827104708167972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6170.1220665450617455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6100.1206816733997808No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5800.1147465091342178No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5380.10643727916242961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)