FastQCFastQC Report
Wed 8 May 2024
EGAF00007961510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486187
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12060.248052704000724No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9220.18963896607683875No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9010.18531964038528384No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8190.16845370197064094No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7820.16084346146647277No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6700.13780705777818No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5920.12176384806669038No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5050.1038694987731058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)