FastQCFastQC Report
Wed 8 May 2024
EGAF00007961511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486187
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23950.49260881101304643No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19990.4111586694008684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12730.26183340977854197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11260.23159812993765772No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8300.17071620590431252No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.1544673140170346No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6250.12855135986770522No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5550.11415360756252223No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5430.11168542145306229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)