FastQCFastQC Report
Wed 8 May 2024
EGAF00007961512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508340
Total Bases22.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11860.233308415627336No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9410.1851123263957194No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8860.17429279616005036No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8400.16524373450839988No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7930.1559979541251918No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7840.15422748554117321No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5650.1111460833300547No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5200.10229374040996184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)