FastQCFastQC Report
Wed 8 May 2024
EGAF00007961513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508340
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20000.39343746311523786No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12470.24530825825235078No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11550.22721013494904985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9010.17724357713341465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8620.16957154660266752No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6270.12334264468662706No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5900.11606405161899516No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.1152771766927647No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.10957233347759372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)