FastQCFastQC Report
Wed 8 May 2024
EGAF00007961514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489743
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10990.22440341158526003No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9390.191733215176123No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8860.18091121261559634No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7920.16171747222522834No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7890.161104906042557No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7350.15007871475447326No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6190.1263928223578489No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4990.10189017505099612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)