FastQCFastQC Report
Wed 8 May 2024
EGAF00007961515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489743
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24400.4982204952393398No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20070.4098067762071127No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11620.23726730142135774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11580.23645054651112932No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8270.16886407768972705No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7920.16171747222522834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.1321101067294479No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5390.11005772415328038No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5280.10781164815015223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)