FastQCFastQC Report
Wed 8 May 2024
EGAF00007961517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470621
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20770.4413317722753553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16450.3495381634053729No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15510.32956455406792307No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11760.24988260192384104No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11670.24797023507238308No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11500.2443579865751847No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9850.20929792763178864No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9430.20037354899165144No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9300.1976112413173233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9030.19187414076294937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8760.1861370402085755No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8670.1842246733571175No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8610.1829497621228122No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8520.18103739527135423No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8410.17870005800846117No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8340.1772126615684383No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7390.15702656702527087No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.15660159661383577No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7290.15490171496809535No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7120.15128946647089697No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6980.14831467359085124No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6910.14682727715082838No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6840.1453398807108055No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6470.13747792809925607No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6300.1338656796020577No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.13067840151629442No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6000.12749112343053115No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5870.12472881575620297No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5720.1215415376704397No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5470.1162294075275009No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5410.1149544962931956No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5300.11261715903030252No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4970.1056051472416233No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4950.1051801768301882No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4820.10241786915586003No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4750.10093047271583716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)