FastQCFastQC Report
Wed 8 May 2024
EGAF00007961519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452182
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22480.49714495490753724No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19620.4338960860892295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15140.3348209349332791No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14580.3224365410387853No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11160.24680327832598378No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11080.24503407919819897No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10750.23773613279608652No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9900.21893839206337273No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9460.20920779686055616No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8830.19527535372925062No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8460.18709280776324577No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8190.18112176070697197No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8150.18023716114307956No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8120.17957371147016024No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8060.1782468121243216No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8020.1773622125604292No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7960.1760353132145906No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7600.16807391713955885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.16298746964717747No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6810.15060307575268367No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6790.15016077597073746No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6740.1490550265158719No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6680.1477281271700333No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6670.1475069772790602No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6200.1371129324033243No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6040.13357453414775466No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5910.1306995855651043No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5910.1306995855651043No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5890.1302572857831581No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5680.12561313807272292No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5170.11433449363309463No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5040.1114595450504443No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4790.10593079777611669No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4710.10416159864833187No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4710.10416159864833187No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4700.10394044875735876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)