FastQCFastQC Report
Wed 8 May 2024
EGAF00007961520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473135
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15700.33182918194595623No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12300.25996808521880643No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12280.25954537288511736No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11410.2411573863696408No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT11300.23883246853435067No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10390.21959905735149587No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9650.20395870100499858No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9530.20142242700286386No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9050.1912773309943251No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8530.18028681031840807No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8240.1741574814799159No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7950.16802815264142368No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7770.16422374163822165No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7710.1629556046371543No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7390.15619220729812844No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7220.15259915246177094No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6540.13822693311634102No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6350.1342111659462944No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6340.13399980977944984No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6320.13357709744576074No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6300.13315438511207162No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG6190.13082946727678146No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6060.12808183710780222No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6050.12787048094095765No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5810.12279793293668827No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5710.12068437126824268No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5710.12068437126824268No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5180.1094824944254811No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5030.10631215192281272No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4930.10419859025436716No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4840.10229638475276613No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4760.10060553541800965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)