FastQCFastQC Report
Wed 8 May 2024
EGAF00007961521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473135
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21970.4643494985574942No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16170.3417629217876505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15690.33161782577911164No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12130.256375030382449No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11880.25109112621133506No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11550.24411637270546463No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10040.21220159151193632No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9940.21008802984349076No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9890.20903124900926795No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9050.1912773309943251No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8540.18049816648525263No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8500.17965274181787438No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8470.17901867331734073No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8160.17246663214515942No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8030.16971900197618017No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7980.16866222114195736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7700.16274424847030974No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7440.15724898813235122No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7350.1553467826307502No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7180.15175372779439272No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6940.14668117979012332No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6710.14181998795269848No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6670.14097456328532026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.13970642628425292No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6390.13505659061367264No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6020.12723641244042397No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC6000.12681370010673487No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5890.12448878227144472No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5880.12427742610460017No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5420.11455504242975048No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5190.10969385059232566No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5040.1065235080896573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5030.10631215192281272No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4890.10335316558698891No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4830.10208502858592157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)