FastQCFastQC Report
Wed 8 May 2024
EGAF00007961523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452837
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22820.5039340866581132No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19730.4356976130484037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15410.34029904800181965No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14540.3210868369854937No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11120.24556297299028126No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11080.24467965294355365No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11050.24401716290850792No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9490.20956768108613033No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9100.20095531063053593No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9080.20051365060717213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8640.19079713009316818No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8420.18593886983616623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8070.17820981942729947No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8050.17776815940393562No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8030.17732649938057182No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7970.1760015193104804No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7750.1711432590534784No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7560.16694748883152216No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7310.16142673853947448No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7280.16076424850442875No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7030.15524349821238106No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6730.14861859786192383No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6670.14729361779183237No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6530.14420199762828567No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6520.14398116761660376No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6350.14022705741801134No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5990.13227717699746266No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5780.1276397467521426No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5540.12233982647177682No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5270.11637741615636531No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5260.11615658614468341No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5170.11416911603954623No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5020.11085666586431762No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4540.10025682530358607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)