FastQCFastQC Report
Wed 8 May 2024
EGAF00007961524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541038
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26070.48185155201667906No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20150.37243225059977303No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15740.2909222642402197No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15250.28186559908915826No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13270.2452692786828282No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10350.19129894757854346No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8760.16191099331285416No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8250.15248466835970856No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8230.15211500855762441No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7580.1401010649898898No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6730.12439052340131376No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6450.11921528617213578No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6080.11237657983357917No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5790.1070165127033591No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5700.10535304359398047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)