FastQCFastQC Report
Wed 8 May 2024
EGAF00007961525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541038
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27380.5060642690531904No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25050.46299890211038786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17490.32326749692258216No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15640.289073965229799No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15560.2875953260214625No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14090.26042533056827805No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12130.2241986699640321No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10390.19203826718271175No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9430.17429459668267294No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8700.16080201390660176No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6980.12901127092736553No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6660.12309671409401927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6610.12217256458880892No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6570.12143324498464063No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6510.1203242655783882No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6330.11699732735963093No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5920.10941930141690603No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5680.10498338379189631No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5510.10184127547418112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)