FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521019
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23350.4481602398377026No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18530.35564921816670797No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15320.2940391809127882No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14550.27926044923505666No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12810.24586435427498807No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9800.1880929486256739No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8280.15891934843067143No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8260.15853548527021089No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8080.15508071682606583No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7250.13915039566695264No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6430.12341200608806972No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6310.12110882712530638No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6300.12091689554507609No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5840.11208804285448323No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5650.10844134283010792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)