FastQCFastQC Report
Wed 8 May 2024
EGAF00007961527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521019
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26530.5091944823509316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24570.47157589262579674No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22930.44009911346803093No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16660.3197580126636457No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15260.2928875914314065No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15100.28981668614772205No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13510.2592995648911076No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12140.23300493839955935No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10270.19711373289649706No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8830.16947558534333682No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8570.16448536425734955No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7350.14106971146925543No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6500.12475552714968167No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6260.12014916922415497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6170.11842178500208246No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5940.11400735865678605No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5630.10805747966964738No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5350.10268339542319953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)