FastQCFastQC Report
Wed 8 May 2024
EGAF00007961528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541352
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25740.47547621510588306No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20060.37055372474840764No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16090.29721881511474973No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15990.29537158817183645No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12690.23441309905569757No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10780.19913106444605358No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8630.15941568517341767No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8400.15516706320471707No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7720.14260591999290664No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7700.14223647460432398No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6930.1280128271438916No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6490.11988502859507308No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6340.11711418818070314No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6080.11231139812912855No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5680.10492249035747535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)