FastQCFastQC Report
Wed 8 May 2024
EGAF00007961529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541352
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27450.5070637958297004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24560.45367893717950614No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18030.3330550178072677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16510.3049771682749856No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16270.30054382361199367No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13750.2539937046505786No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12820.23681449408148486No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9560.17659489574251133No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9070.16754348372223618No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8850.16347958444782693No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7290.13466284413837945No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7170.1324461718068835No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6470.11951558320649042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6400.1182225243464511No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6280.11600585201495515No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6250.11545168393208116No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6060.11194195274054589No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5890.10880166693759327No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5880.10861694424330195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5550.10252109533168807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)