FastQCFastQC Report
Wed 8 May 2024
EGAF00007961530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524018
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24320.4641061948253686No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18970.36201046528936026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15800.30151636012503386No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15700.29960802873183745No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12520.2389230904281914No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10470.19980229686766485No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8280.15800983935666332No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8060.1538115102916312No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7890.1505673469231973No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7860.1499948475052384No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6380.12175154288593139No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6260.1194615452140957No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6170.11774404696021892No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5890.11240071905926896No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5370.10247739581464758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)