FastQCFastQC Report
Wed 8 May 2024
EGAF00007961531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524018
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26740.5102878145407219No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25790.49215866630535593No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23310.44483204775408475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17920.3419729856607979No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15970.30476052349346777No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15430.29445553397020713No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13240.2526630764592056No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12760.24350308577186278No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9600.183199813746856No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8460.16144483586441688No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8370.1597273376105401No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6870.13110236671259384No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6340.12098821032865284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6330.1207973771893332No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6240.11907987893545642No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5840.11144655336267076No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5830.1112557202233511No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5550.10591239232240116No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5290.10095073070009045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)