FastQCFastQC Report
Wed 8 May 2024
EGAF00007961533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506973
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9720.19172618660165333No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7260.14320289246172874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6520.12860645438711726No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6210.12249173032883409No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5860.11558800961786919No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5570.10986778388592687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)