FastQCFastQC Report
Wed 8 May 2024
EGAF00007961535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488869
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24090.4927700467814486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9840.20128091574634516No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7390.15116524058592384No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6480.1325508469549102No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5970.12211860437049597No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5040.10309510318715238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)