FastQCFastQC Report
Wed 8 May 2024
EGAF00007961537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508829
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9730.19122337759836802No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7720.15172091213354585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6490.12754776162522186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6210.12204493061519686No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6110.12007963382590223No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5310.10435725951154512No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5150.10121278464867373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)