FastQCFastQC Report
Wed 8 May 2024
EGAF00007961539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493320
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26260.5323116840995703No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10070.20412713857131276No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7490.1518284277953458No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6120.12405740695694478No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5750.11655720424876348No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4960.1005432579258899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)