FastQCFastQC Report
Wed 8 May 2024
EGAF00007961541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486209
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13920.2862966337521518No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9560.19662326283552958No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7560.15548868902056523No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6440.1324533276841852No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6120.1258717958737909No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6000.12340372144489303No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5890.12114131988507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5560.11435411520560089No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4920.10119105158481229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)