FastQCFastQC Report
Wed 8 May 2024
EGAF00007961543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469933
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24550.522414897442827No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13390.284934235305884No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8950.19045268155247663No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7870.16747068199083698No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5930.1261882012967806No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5860.12469862725111877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5680.1208682939908455No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5510.11725075702280964No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4940.10512136836527759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)