FastQCFastQC Report
Wed 8 May 2024
EGAF00007961545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488686
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14010.28668715698833197No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9350.1913294017017062No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8150.1667737565635193No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6780.13873939503075594No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6180.12646157246166248No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6110.1250291598286016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5820.11909487892020643No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5610.11479764102102373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)