FastQCFastQC Report
Wed 8 May 2024
EGAF00007961547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474216
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24910.5252880543887174No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12940.272871434114412No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9390.1980110329470115No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8190.17270610860873525No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5990.12631374732189551No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5680.11977664186784082No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5580.11766789817298445No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5440.11471565700018557No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4870.10269581793950436No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4810.10143057172259054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)