FastQCFastQC Report
Wed 8 May 2024
EGAF00007961549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440810
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13560.30761552596356706No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8490.19259998638869352No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.12771942560286745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5320.12068691726594225No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5040.11433497425194529No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4660.10571448016152084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4460.10117737800866586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)