FastQCFastQC Report
Wed 8 May 2024
EGAF00007961550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394778
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG7950.20137900288263277No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5600.14185187624437023No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4910.12437369863568892No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4720.11956086712025492No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4150.10512237257395295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)