FastQCFastQC Report
Wed 8 May 2024
EGAF00007961551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394778
Total Bases12.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21530.5453698027752306No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12090.30624806853472075No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC7810.1978327059765235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5030.12741338169806826No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4470.11322819407363126No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4200.10638890718327769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC3950.10005623413665403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)