FastQCFastQC Report
Wed 8 May 2024
EGAF00007961553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456611
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14130.3094537801323227No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8720.1909721842005558No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6150.13468795101300668No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5740.12570875427880626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5550.12154766310929872No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4870.10665533681842969No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4710.10315126004410756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)