FastQCFastQC Report
Wed 8 May 2024
EGAF00007961554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452075
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG8980.19863960626002325No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6660.1473206879389482No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5700.12608527346126197No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5620.12431565558812144No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5030.1112647237737101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)