FastQCFastQC Report
Wed 8 May 2024
EGAF00007961555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452075
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24320.5379638334347177No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14960.330918542277277No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8940.19775479732345294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5620.12431565558812144No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5450.12055521760769784No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4770.10551346568600344No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4650.10285903887629266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)