FastQCFastQC Report
Wed 8 May 2024
EGAF00007961556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490994
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13400.27291575864470846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12530.2551966011804625No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12400.2525489109846556No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10970.22342431883078No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9740.19837309620891497No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9630.19613274296630917No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8950.1822832865574732No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7880.16049075956121664No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG6680.13605054236915318No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5810.11833138490490717No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5360.1091663034578834No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5320.10835162955148128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)