FastQCFastQC Report
Wed 8 May 2024
EGAF00007961557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490994
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31290.6372786632830544No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21410.43605420840173204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12930.26334334024448364No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10330.21038953632834617No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10330.21038953632834617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9530.19409605820030387No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9200.18737499847248643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7540.15356603135679867No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6640.13523586846275107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6230.12688546092212938No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.11303600451329344No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5400.10998097736428551No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5090.1036672545896691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)