FastQCFastQC Report
Wed 8 May 2024
EGAF00007961558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470353
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13730.2919084177203079No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12100.257253594640621No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11300.24024509251562126No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10300.2189844648593716No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9470.20133814390468435No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8440.17943969741874718No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8380.17816405975937222No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8110.1724236902921848No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5830.12394945923593556No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5800.12331164040624808No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5230.11119308264218578No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4870.10353925668593589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)