FastQCFastQC Report
Wed 8 May 2024
EGAF00007961559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470353
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30760.6539769067062398No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24580.5225862277906168No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20800.44222105524999306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11590.24641067453593365No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9920.2109054263499967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9080.19304649911874697No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8870.18858176731093454No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8580.18241618529062215No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7610.16179337646405997No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5720.1216107901937481No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5190.11034265753593578No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5060.10757877594062332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)