FastQCFastQC Report
Wed 8 May 2024
EGAF00007961560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491931
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13630.2770713778964936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12050.24495305235896903No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11800.2398710388245506No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10690.2173068987317327No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10060.20450022462499823No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9750.19819852784231937No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8320.16912941042544585No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7990.1624211525600135No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG6940.14107669571545603No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6310.12827002160872156No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5380.10936493126068494No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5310.10794196747104777No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5260.10692556476416407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)