FastQCFastQC Report
Wed 8 May 2024
EGAF00007961561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491931
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30870.6275270312299895No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20960.4260760147256424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.25389739617954554No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11020.22401515659716503No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10430.2120216046559375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9320.18945746456311963No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8080.16425067743240415No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8040.16343755526689718No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6850.1392471708430654No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6290.1278634605259681No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.11444694479510338No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.11282070046408949No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5450.11078789505032209No Hit
TACGTAGTTCAGTCTGGTCTGAACCAGAACT5010.10184355122974564No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4950.1006238679814852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)