FastQCFastQC Report
Wed 8 May 2024
EGAF00007961562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475277
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13360.28109923265800785No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12020.25290514794530344No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11830.24890747921738268No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10160.21377007513513174No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9510.20009384001329752No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8850.18620720127420431No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8060.16958531551074424No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7670.16137957443764372No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG6200.1304502427005725No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5520.11614279672696134No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5400.11361795331985347No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5120.10772665203660182No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5010.10541221224675294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)