FastQCFastQC Report
Wed 8 May 2024
EGAF00007961563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475277
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31170.6558280749962653No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24480.5150680550500024No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20520.4317482226154432No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12120.25500918411789336No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10340.2175573402457935No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9640.20282908703766434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9110.191677695322938No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7650.16095876720312574No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7390.15548827315439206No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6180.13002943546605453No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5450.11466997140614842No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5420.11403876055437144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.11256593523355854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)