FastQCFastQC Report
Wed 8 May 2024
EGAF00007961565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491169
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17790.3621971256329288No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16800.34204113044593615No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16520.33634044493850385No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13420.27322571253478944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13220.269153794315195No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9930.2021707396028658No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9000.1832363198817515No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6680.13600206853445557No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6660.1355948767124961No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6090.12398990978665185No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5710.11625326516942233No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5440.1107561755729698No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4950.10077997593496332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)