FastQCFastQC Report
Wed 8 May 2024
EGAF00007961567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471559
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23800.5047088487336686No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17300.36686819676859095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16160.3426930670393312No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16120.3418448168733923No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13070.2771657417205482No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12090.2563836126550442No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9950.211002228777311No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8370.17749634722272292No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6810.1444145907511043No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6430.13635621417468438No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5030.10666745836682154No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4940.10475889549345892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)